Index

A

array_to_chunks() (moosez.image_processing.ImageChunker static method)

C

chunk_along_axis() (moosez.image_processing.ImageResampler static method) chunks_to_array() (moosez.image_processing.ImageChunker static method) confirm_orientation() (in module moosez.image_processing) confirm_orthonormality() (in module moosez.image_processing) convert_to_sitk() (in module moosez.image_processing)

copy_file() (in module moosez.file_utilities) copy_files_to_destination() (in module moosez.file_utilities) create_dicom_lookup() (in module moosez.image_conversion) create_directory() (in module moosez.file_utilities) cropped_fov_prediction_pipeline() (in module moosez.predict)

D

dcm2niix() (in module moosez.image_conversion) determine_model_expectations() (in module moosez.input_validation)

determine_orientation_code() (in module moosez.image_processing) determine_splits() (moosez.image_processing.ImageChunker static method) download_enhance_data() (in module moosez.download)

E

expand_segmentation_fov() (in module moosez.image_processing)

F

find_pet_file() (in module moosez.file_utilities)

G

get_default_download_folder() (in module moosez.download) get_files() (in module moosez.file_utilities)

get_intensity_statistics() (in module moosez.image_processing) get_nifti_file_stem() (in module moosez.file_utilities) get_shape_statistics() (in module moosez.image_processing)

I

ImageChunker (class in moosez.image_processing) ImageResampler (class in moosez.image_processing)

initialize_predictor() (in module moosez.predict) is_dicom_file() (in module moosez.image_conversion)

L

largest_connected_component() (in module moosez.image_processing)

limit_fov() (in module moosez.image_processing)

M

main() (in module moosez.moosez) module moosez moosez.constants moosez.download moosez.file_utilities moosez.image_conversion moosez.image_processing moosez.input_validation moosez.moosez moosez.predict moose() (in module moosez) (in module moosez.moosez) moose_folder_structure() (in module moosez.file_utilities) moose_subject() (in module moosez.moosez) moosez module

moosez.constants module moosez.download module moosez.file_utilities module moosez.image_conversion module moosez.image_processing module moosez.input_validation module moosez.moosez module moosez.predict module

N

non_nifti_to_nifti() (in module moosez.image_conversion)

P

predict_from_array_by_iterator() (in module moosez.predict)

preprocessing_iterator_from_array() (in module moosez.predict)

R

remove_accents() (in module moosez.image_conversion) rename_nifti_files() (in module moosez.image_conversion) resample_chunk_SimpleITK() (moosez.image_processing.ImageResampler static method)

resample_image_SimpleITK_DASK() (moosez.image_processing.ImageResampler static method) resample_image_SimpleITK_DASK_array() (moosez.image_processing.ImageResampler static method) resample_segmentation() (moosez.image_processing.ImageResampler static method) reslice_identity() (moosez.image_processing.ImageResampler static method)

S

select_files_by_modality() (in module moosez.file_utilities) select_moose_compliant_subjects() (in module moosez.input_validation)

standardize_image() (in module moosez.image_processing) standardize_to_nifti() (in module moosez.image_conversion)

U

USAGE_MESSAGE (in module moosez.constants)